diff --git a/setupFiles/compile.sh b/setupFiles/compile.sh
index 80119b0..2f8873b 100644
--- a/setupFiles/compile.sh
+++ b/setupFiles/compile.sh
@@ -4,26 +4,29 @@
 
 mkdir -p pdf
 
-if test -f "pdf/output.aux"; then
-    rm pdf/*
-fi
-latexmk -C
-latexmk -pdf -jobname=pdf/output main.tex -f
-count=`ls -1 *.aux 2>/dev/null | wc -l`
-if [ $count != 0 ]
-then
-    mv *.aux pdf/
-fi
-count=`ls -1 *.bbl 2>/dev/null | wc -l`
-if [ $count != 0 ]
-then
-    mv *.bbl pdf/
-fi
-count=`ls -1 *.blg 2>/dev/null | wc -l`
-if [ $count != 0 ]
-then
-    mv *.blg pdf/
-fi
-mkdir -p pdf/log
-find pdf -maxdepth 1 -type f -not -name 'output.pdf' -exec mv {} pdf/log/ \;
-mv pdf/output.pdf .
+# if test -f "pdf/output.aux"; then
+#     rm pdf/*
+# fi
+# latexmk -C
+latexmk -pdf -jobname=pdf/output main.tex -f -quiet
+# count=`ls -1 *.aux 2>/dev/null | wc -l`
+# if [ $count != 0 ]
+# then
+#     mv *.aux pdf/
+# fi
+# count=`ls -1 *.bbl 2>/dev/null | wc -l`
+# if [ $count != 0 ]
+# then
+#     mv *.bbl pdf/
+# fi
+# count=`ls -1 *.blg 2>/dev/null | wc -l`
+# if [ $count != 0 ]
+# then
+#     mv *.blg pdf/
+# fi
+# mkdir -p pdf/log
+# find pdf -maxdepth 1 -type f -not -name 'output.pdf' -exec mv {} pdf/log/ \;
+cp pdf/output.pdf .
+
+echo ===================================
+echo Done compiling.
diff --git a/setupFiles/install.sh b/setupFiles/install.sh
index 3409318..58e5483 100644
--- a/setupFiles/install.sh
+++ b/setupFiles/install.sh
@@ -1,14 +1,18 @@
 #! /bin/bash
-
 # Adapted from github.com/gkilleen33/overleaf-offline under the MIT license
 
-# Add build files to gitignore
-cd /app/project
+# CD into the main directory
+cd /app/project || exit 2
 
-if test -f ".autoltx"; then
-    echo AutoLTX already installed, skipping steup
+if test -d "pdf/"; then
+    rm -r pdf/
+fi
+
+# Update old installation
+if test -f ".autoltxXenon"; then # Intentional wrong file name checking, to ensure the files are updated everytime the container starts. To implement version checking in later version.
+  echo AutoLTX already installed, skipping steup
 else
-if test -f ".gitignore"; then
+  if test -f ".gitignore"; then
     # Adding build files to .gitignore
     grep -qxF 'pdf/' .gitignore || echo 'pdf/' >> .gitignore
     grep -qxF 'latexmkrc' .gitignore || echo 'latexmkrc' >> .gitignore
@@ -17,18 +21,16 @@ if test -f ".gitignore"; then
     grep -qxF 'output.pdf' .gitignore || echo 'output.pdf' >> .gitignore
     touch .autoltx
     echo Configuring AutoLTX for this project
-else
+  else
     # Creating .gitignore file
     printf 'pdf/\nlatexmkrc\ncompile.sh\n.autoltx\noutput.pdf\n' >> .gitignore
     touch .autoltx
-fi
-
-# mkdir -p pdf/config
-
-# Add latexmk rc file to build files
-cp /app/setupFiles/latexmkrc /app/project/
-
-# Add compile script to build files
-cp /app/setupFiles/compile.sh /app/project
-chmod +x compile.sh
+  fi
+
+  # Add latexmk rc file to build files
+  cp /app/setupFiles/latexmkrc /app/project/
+
+  # Add compile script to build files
+  cp /app/setupFiles/compile.sh /app/project
+  chmod +x compile.sh
 fi
diff --git a/startup.sh b/startup.sh
index 5e852af..c64c8ec 100644
--- a/startup.sh
+++ b/startup.sh
@@ -1,13 +1,13 @@
 #! /bin/bash
 
-echo Running as user: $USER
+echo Running as user: "$USER"
 
 if [[ -z ${1} ]]; then
     echo Main file not spicified
     echo Restart the container with proper arguments
     exit 1
 else
-    echo Using main latex file: $1
+    echo Using main latex file: "$1"
 fi
 
 if test -d /app/project; then
@@ -25,5 +25,5 @@ fi
 # start auto compile loop
 echo Starting AutoLTX...
 sleep 3
-cd /app/project
-ls $1 | entr -n sh -c ./compile.sh
+cd /app/project || exit 2
+ls "$1" | entr -n sh -c ./compile.sh